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DETable-class DETable initialize,DETable-method .cacheCommonInfo,DETable-method .createObservers,DETable-method .defineDataInterface,DETable-method .fullName,DETable-method .generateTable,DETable-method .panelColor,DETable-method .refineParameters,DETable-method
- The DETable class
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LogFCLogFCPlot-class LogFCLogFCPlot initialize,LogFCLogFCPlot-method .cacheCommonInfo,LogFCLogFCPlot-method .createObservers,LogFCLogFCPlot-method .defineDataInterface,LogFCLogFCPlot-method .fullName,LogFCLogFCPlot-method .generateDotPlotData,LogFCLogFCPlot-method .panelColor,LogFCLogFCPlot-method .refineParameters,LogFCLogFCPlot-method
- The LogFCLogFCPlot class
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MAPlot-class MAPlot initialize,MAPlot-method .cacheCommonInfo,MAPlot-method .createObservers,MAPlot-method .defineDataInterface,MAPlot-method .fullName,MAPlot-method .generateDotPlotData,MAPlot-method .panelColor,MAPlot-method .refineParameters,MAPlot-method
- The MAPlot class
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VolcanoPlot-class VolcanoPlot initialize,VolcanoPlot-method .cacheCommonInfo,VolcanoPlot-method .createObservers,VolcanoPlot-method .defineDataInterface,VolcanoPlot-method .fullName,VolcanoPlot-method .generateDotPlotData,VolcanoPlot-method .panelColor,VolcanoPlot-method .refineParameters,VolcanoPlot-method
- The VolcanoPlot class
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contrastResultsNames() contrastResults()
- Extract contrast results embedded in a SummarizedExperiment object
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de-generics pValue log2FoldChange averageLog2
- Generics for Differential Expression Results
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iSEEDESeq2Results-class iSEEDESeq2Results showAsCell,iSEEDESeq2Results-method pValue,iSEEDESeq2Results-method log2FoldChange,iSEEDESeq2Results-method averageLog2,iSEEDESeq2Results-method embedContrastResults,iSEEDESeq2Results-method embedContrastResults,DESeqResults-method
- The iSEEDESeq2Results class
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iSEELimmaResults-class iSEELimmaResults showAsCell,iSEELimmaResults-method pValue,iSEELimmaResults-method log2FoldChange,iSEELimmaResults-method averageLog2,iSEELimmaResults-method embedContrastResults,iSEELimmaResults-method
- The iSEELimmaResults class
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iSEEedgeRResults-class iSEEedgeRResults showAsCell,iSEEedgeRResults-method pValue,iSEEedgeRResults-method log2FoldChange,iSEEedgeRResults-method averageLog2,iSEEedgeRResults-method embedContrastResults,TopTags-method embedContrastResults,iSEEedgeRResults-method
- The iSEEedgeRResults class
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embedContrastResults() embedContrastResultsMethods
- Generics for Embbedding Results into a SummarizedExperiment Object