The MAPlot is a RowDataPlot subclass that is dedicated to creating an MA plot. It retrieves the log-fold change (M) and mean average (A) values and creates a row-based plot where each point represents a feature.
Slot overview
The following slots control the test procedure:
ContrastName, a character scalar indicating the name of the contrast to display.
In addition, this class inherits all slots from its parent RowDotPlot, DotPlot, and Panel classes.
Examples
x <- MAPlot()
x
#> Panel object of class MAPlot
#> Get or set individual parameters with ‘[[’
#> Available parameters:
#> BrushData:
#> ColorBy: None
#> ColorByDefaultColor: black
#> ColorByFeatureDynamicSource: FALSE
#> ColorByFeatureName: NA
#> ColorByFeatureNameColor: red
#> ColorByFeatureSource: ---
#> ColorByRowData: NA
#> ColorBySampleDynamicSource: FALSE
#> ColorBySampleName: NA
#> ColorBySampleNameAssay: logcounts
#> ColorBySampleSource: ---
#> ContourAdd: FALSE
#> ContourColor: blue
#> ContrastName: NA
#> CustomLabels: FALSE
#> CustomLabelsText: NA
#> DataBoxOpen: FALSE
#> Downsample: FALSE
#> DownsampleResolution: 200
#> FacetColumnBy: None
#> FacetColumnByRowData: NA
#> FacetRowBy: None
#> FacetRowByRowData: NA
#> FixAspectRatio: FALSE
#> FontSize: 1
#> HoverInfo: TRUE
#> LabelCenters: FALSE
#> LabelCentersBy: NA
#> LabelCentersColor: black
#> LegendPointSize: 1
#> LegendPosition: Bottom
#> PanelHeight: 500
#> PanelId: NA
#> PanelWidth: 4
#> PointAlpha: 1
#> PointSize: 1
#> RowSelectionDynamicSource: FALSE
#> RowSelectionRestrict: FALSE
#> RowSelectionSource: ---
#> SelectionAlpha: 0.1
#> SelectionBoxOpen: FALSE
#> SelectionHistory:
#> ShapeBy: None
#> ShapeByRowData: NA
#> SizeBy: None
#> SizeByRowData: NA
#> TooltipRowData:
#> VersionInfo: list of length 1
#> ViolinAdd: TRUE
#> VisualBoxOpen: FALSE
#> VisualChoices: Color
#> ZoomData: