Skip to contents

Generics for Differential Expression Results

Source: R/AllGenerics.R
de-generics.Rd

An overview of the generics for accessing common pieces of information in differential expression results.

Definitions

  • pValue(x) returns a named numeric vector of raw p-values.

  • log2FoldChange(x) returns a named numeric vector of log2-fold-change values.

  • averageLog2(x) returns a named numeric vector of average log2-expression values.

Author

Kevin Rue-Albrecht

Examples

showMethods(pValue)
#> Function: pValue (package iSEEde)
#> x="iSEEDESeq2Results"
#> x="iSEELimmaResults"
#> x="iSEEedgeRResults"
#> 
showMethods(log2FoldChange)
#> Function: log2FoldChange (package iSEEde)
#> x="iSEEDESeq2Results"
#> x="iSEELimmaResults"
#> x="iSEEedgeRResults"
#> 
showMethods(averageLog2)
#> Function: averageLog2 (package iSEEde)
#> x="iSEEDESeq2Results"
#> x="iSEELimmaResults"
#> x="iSEEedgeRResults"
#>