An overview of the generics for accessing common pieces of information in differential expression results.
Definitions
pValue(x)
returns a named numeric vector of raw p-values.log2FoldChange(x)
returns a named numeric vector of log2-fold-change values.averageLog2(x)
returns a named numeric vector of average log2-expression values.
Examples
showMethods(pValue)
#> Function: pValue (package iSEEde)
#> x="iSEEDESeq2Results"
#> x="iSEELimmaResults"
#> x="iSEEedgeRResults"
#>
showMethods(log2FoldChange)
#> Function: log2FoldChange (package iSEEde)
#> x="iSEEDESeq2Results"
#> x="iSEELimmaResults"
#> x="iSEEedgeRResults"
#>
showMethods(averageLog2)
#> Function: averageLog2 (package iSEEde)
#> x="iSEEDESeq2Results"
#> x="iSEELimmaResults"
#> x="iSEEedgeRResults"
#>