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The DETable class

Source: R/DETable-class.R
DETable-class.Rd

The DETable class is a RowTable subclass that is dedicated to creating a volcano plot. It retrieves the table of results for the selected differential expression contrast and creates an interactive table where each row represents a feature.

Slot overview

The following slots control the test procedure:

  • ContrastName, a character scalar indicating the name of the contrast to display.

  • RoundDigits, a logical scalar indicating whether to round numeric values (see SignifDigits).

  • SignifDigits, an integer scalar indicating the number of significant digits to use for rounding numbers (see RoundDigits).

In addition, this class inherits all slots from its parent RowTable and Table classes.

Examples

x <- DETable()
x
#> Panel object of class DETable
#>   Get or set individual parameters with ‘[[’ 
#>   Available parameters:
#>     ContrastName: NA
#>     DataBoxOpen: FALSE
#>     HiddenColumns: 
#>     PanelHeight: 500
#>     PanelId: NA
#>     PanelWidth: 4
#>     RoundDigits: FALSE
#>     RowSelectionDynamicSource: FALSE
#>     RowSelectionSource: ---
#>     Search: 
#>     SearchColumns: 
#>     Selected: NA
#>     SelectionBoxOpen: FALSE
#>     SignifDigits: 3
#>     VersionInfo: list of length 1