The RowTable is a virtual class where each row in the SummarizedExperiment is represented by no more than one row in a datatable
widget.
In panels of this class, single and multiple selections can only be transmitted on the features.
Slot overview
No new slots are added. All slots provided in the Table parent class are available.
Supported methods
In the following code snippets, x
is an instance of a RowTable class.
Refer to the documentation for each method for more details on the remaining arguments.
For setting up data values:
.refineParameters(x, se)
replacesNA
values inSelected
with the first row name ofse
. This will also call the equivalent Table method.
For defining the interface:
.hideInterface(x, field)
returns a logical scalar indicating whether the interface element corresponding tofield
should be hidden. This returnsTRUE
for column selection parameters ("ColumnSelectionSource"
and"ColumnSelectionRestrict"
), otherwise it dispatches to the Panel method.
For monitoring reactive expressions:
.createObservers(x, se, input, session, pObjects, rObjects)
sets up observers to propagate changes in theSelected
to linked plots. This will also call the equivalent Table method.
For controlling selections:
.multiSelectionDimension(x)
returns"row"
to indicate that a row selection is being transmitted..singleSelectionDimension(x)
returns"feature"
to indicate that a feature identity is being transmitted.
For rendering output:
.showSelectionDetails(x)
returns a HTML element containing details about the selected row. This requires a function to be registered byregisterAppOptions
under the option name"RowTable.select.details"
. The function should take a string containing the name of a feature (i.e., the current selection in the RowTable) and returns a HTML element. If no function is registered,NULL
is returned.
Unless explicitly specialized above, all methods from the parent classes DotPlot and Panel are also available.
Subclass expectations
Subclasses are expected to implement methods for:
The method for .generateTable
should create a tab
data.frame where each row corresponds to a row in the SummarizedExperiment object.
See also
Table, for the immediate parent class that contains the actual slot definitions.