NEWS.md
RowDataTable
, ColumnDataTable
panels..selectInputHidden()
.tooltip.signif
to registerAppOptions()
to regulate the number of significant digits shown in the tooltip.DotPlot
panels including colData
or rowData
information.DT::datatable()
prior to selectInput()
.2.9.3
breaking re-rendering of reactivated panels.ComplexHeatmapPlot
panel when dimension of an incoming multiple selection is dismissed by the options of the child panel.Table
panels to a fixed message, as the panel is not re-rendered when search boxes are used.ComplexHeatmapPlot
panels when displaying incoming column selection.ComplexHeatmapPlot
panel when an incoming row selection changes if custom rows are in use. The partial bugfix only applies if the ComplexHeatmapPlot
also disables the restriction on any incoming column selection.ComplexHeatmapPlot
.ComplexHeatmapPlot
..getCachedCommonInfo
.iSEEOptions
in favor of panelDefaults
(for construction-time globals) and registerAppOptions
(for runtime globals)..allowableColorByDataChoices
generic for downstream panels to control ColorBy*Data
choices..getDotPlotColorHelp
utility.RowDotPlot
color tour.ComplexHeatmapPlot
.SelectionEffect="Color"
in favor of ColorBy="Column selection"
and ColorBy="Row selection"
.SelectionColor
as the coloring for selections is determined using colDataColorMap()
instead.SelectionEffect="Restrict"
in favor of ColumnSelectionRestrict
and RowSelectionRestrict
.ColumnSelectionType
and ColumnSelectionSaved
(ditto for rows) as all active/saved selections are now transmitted.cleanDataset()
generic to ensure all names in the SummarizedExperiment are present and unique.saveState=
argument.ComplexHeatmapPlot
documentation.ComplexHeatmapPlot
observers, most obviously for the assay choice..refineParameters()
for FeatureAssayPlot
, SampleAssayPlot
protects the x-axis choice against absent metadata.initial=
in iSEE()
.ColorByFeatureDynamicSource
UI element in ColumnDotPlot
s.DotPlot
.[[<-
assignment into Panel
classes.DotPlot
panels.Table
panels..definePanelTour()
generic.HiddenColumns
mechanism to all Table
subclasses.Table
s when the number of columns change.Table
multiple selections..defineOutput
signature..exportOutput
method for the ComplexHeatmapPlot
class.ComplexHeatmapPlot
class.createLandingPage()
man page.CustomRowsText
slot in the ComplexHeatmapPlot
constructor.*DynamicSource
slots.TENxPBMCData
to Suggests:
.ReducedDimensionPlot()
man page.renderDT
to rerun expression upon panel reorg.bioconductor/bioconductor_docker:devel
.NA
groupings in subsetPointsByGrid()
.rowData
in RowDotPlot
panels..create_visual_box()
.selected.color
to single selections.panel.width
, panel.height
, and assay
to global options..checkboxInputHidden()
.iSEEOptions
..allowableYAxisChoices()
and .allowableXAxisChoices()
methods to intercept choices of x/y-axis variables.iSEE()
in no-SE mode) for enterprise deployments.se
objects missing dimnames
.createCustomPlot()
and createCustomTable()
to provide on-ramp for making customized panels.iSEEOptions
.ComplexHeatmap
.rbind()
of data.frame
and DataFrame
objects.&&
with variable length greater than 1.scater
argument.SingleCellExperiment::clearSpikes()
, SingleCellExperiment::clearSizeFactors()
.aceEditor()
and fileInput()
.isColorMapCompatible()
to checkColormapCompatibility()
.checkColormapCompatibility()
.scater::normalize()
by scater::logNormCounts()
.redDimPlotDefaults()
against empty reducedDims
.ReprocessedAllenData()
to load only tophat_counts
assay.ReprocessedAllenData()
following the deprecation of data(allen)
.Name
field of initialPanels
.NA
values when computing the range of coloring scales.annotateEnsembl()
.?defaults
help page by panel type.sapply()
.importFrom
instructions closer to the relevant code.plot.data
beyond X
and Y
in all.coordinates
. See constant .allCoordinatesNames
. Necessary for correct behaviour of brushes on faceted plots.