Installation

Install

iSEE requires Bioconductor 3.7+ which in turn requires R 3.5+. Choose a version of R that matches your computer’s operating system. We recommend using the latest version of R to access the latest version of iSEE.

Download and install R

Install iSEE

We recommend installing the latest stable version of iSEE from the Bioconductor repository.

Install iSEE from Bioconductor

Note

Follow the link above and scroll down to the section Installation.

Install the iSEE-verse

Most users do not need the full collection of packages that provide extensions to iSEE.

For the aficionados, the command below does just that; it combines all the known iSEE extension packages into a single command that installs them all in one go.

Great for copy-pasting, and for our download statistics!

Note

The code below assumes you have already installed the package BiocManager, which will be the case if you have already installed iSEE or any other package from the Bioconductor repository.

BiocManager::install(c(
    "iSEEde",
    "iSEEhex",
    "iSEEhub",
    "iSEEindex",
    "iSEEpathways",
    "iSEEtree",
    "iSEEu"
))