iSEE: interactive SummarizedExperiment/SingleCellExperiment Explorer

iSEE is a Bioconductor package that provides an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. Particular attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results, e.g., from principal components analysis (PCA) or t-distributed stochastic neighbour embedding (t-SNE)

See also

Useful links:

• https://github.com/iSEE/iSEE

• Report bugs at https://github.com/iSEE/iSEE/issues

Author

Aaron Lun infinite.monkeys.with.keyboards@gmail.com

Charlotte Soneson charlottesoneson@gmail.com

Federico Marini marinif@uni-mainz.de

Kevin Rue-Albrecht kevinrue67@gmail.com