Generics for Pathway Analysis Results — pathway-generics • iSEEpathways

An overview of the generics for accessing common pieces of information in pathway analysis results.

Value

pathwayType(x) returns a character scalar indicating the type of pathways analysed.

pathwaysList(x) returns the named list of pathways used in the analysis, or NULL.

featuresStats(x) returns the named numeric vector of feature-level statistics used in the analysis, or NULL.

Author

Kevin Rue-Albrecht

Examples

showMethods(pathwayType)
#> Function: pathwayType (package iSEEpathways)
#> x="iSEEfgseaResults"
#> 
showMethods(pathwaysList)
#> Function: pathwaysList (package iSEEpathways)
#> x="iSEEfgseaResults"
#> 
showMethods(featuresStats)
#> Function: featuresStats (package iSEEpathways)
#> x="iSEEfgseaResults"
#>