The FgseaEnrichmentPlot is a Panel subclass where each row represents a set of features (i.e., rows).
Selections in this panel can be transmitted to other row-oriented panels.
Value
FgseaEnrichmentPlot() returns an object of class FgseaEnrichmentPlot.
In addition, this class inherits all slots from its parent Panel class.
Slot overview
The following slots control the test procedure:
ResultName, a character scalar indicating the name of the pathway analysis result to display.PathwayId, a character scalar indicating the identifier of the pathway to display.BrushData, a list containing a Shiny brush along the x-axis (see?brushedPoints). Defaults to an empty list, i.e., no brush or lasso.
Examples
x <- FgseaEnrichmentPlot(ResultName="fgsea", PathwayId="GO:0000002")
x
#> Panel object of class FgseaEnrichmentPlot
#> Get or set individual parameters with ‘[[’
#> Available parameters:
#> BrushData:
#> ColumnSelectionDynamicSource: FALSE
#> ColumnSelectionRestrict: FALSE
#> ColumnSelectionSource: ---
#> DataBoxOpen: FALSE
#> PanelHeight: 500
#> PanelId: NA
#> PanelWidth: 4
#> PathwayId: GO:0000002
#> ResultName: fgsea
#> RowSelectionDynamicSource: FALSE
#> RowSelectionRestrict: FALSE
#> RowSelectionSource: ---
#> SelectionBoxOpen: FALSE
#> SelectionHistory:
#> VersionInfo: list of length 1