iSEEdemo

The iSEE package is a flexible, powerful and extendible application to explore any dataset stored in SummarizedExperiment objects, including single cell and spatially resolved data.

iSEE enables a multitude of panels to gain in-depth insight in your data; it does so combining interactivity and reproducibility, and providing an ideal companion to CELLxGENE for deeper dives into data.

https://iSEE.github.io/iSEEdemo                https://github.com/iSEE/iSEEdemo

How to install

library("remotes")
remotes::install_github("iSEE/iSEEdemo", 
                        dependencies = TRUE, 
                        build_vignettes = TRUE)

How to run this demo

• Open the iSEEdemo.Rproj project file
• Navigate to the vignettes folder
• Make sure the datasets are included in the datasets subfolder (if using Seurat or AnnData)
• Open the iSEEdemo.Rmd Rmarkdown file and execute its content live!